IL_12DP_323

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

12DP|1|2a|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_323 not in the Motif Atlas

Homologous match to IL_8B0X_046

Geometric discrepancy: 0.1351

The information below is about IL_8B0X_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82453.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

12DP|1|2a|U|1052
12DP|1|2a|G|1053
12DP|1|2a|C|1054
12DP|1|2a|A|1055
12DP|1|2a|U|1056
*
12DP|1|2a|A|1204
12DP|1|2a|U|1205
12DP|1|2a|G|1206

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z