IL_12DP_330
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- 12DP|1|2a|A|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DP_330 not in the Motif Atlas
- Homologous match to IL_8B0X_053
- Geometric discrepancy: 0.2475
- The information below is about IL_8B0X_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12056.1
- Basepair signature
- cWW-L-R-R-bif-cWW
- Number of instances in this motif group
- 2
Unit IDs
12DP|1|2a|U|1247
12DP|1|2a|A|1248
12DP|1|2a|C|1249
12DP|1|2a|A|1250
12DP|1|2a|A|1251
12DP|1|2a|A|1252
12DP|1|2a|G|1253
*
12DP|1|2a|C|1284
12DP|1|2a|A|1285
12DP|1|2a|A|1286
12DP|1|2a|A|1287
12DP|1|2a|A|1288
12DP|1|2a|A|1289
12DP|1|2a|G|1290
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2g
- 30S ribosomal protein S7
- Chain 2i
- 30S ribosomal protein S9
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2u
- 30S ribosomal protein Thx
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