IL_12DP_335

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_335 not in the Motif Atlas

Homologous match to IL_8B0X_058

Geometric discrepancy: 0.0971

The information below is about IL_8B0X_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.5

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

12DP|1|2a|G|1401
12DP|1|2a|4OC|1402
12DP|1|2a|C|1403
12DP|1|2a|5MC|1404
*
12DP|1|2a|G|1497
12DP|1|2a|UR3|1498
12DP|1|2a|A|1499
12DP|1|2a|A|1500
12DP|1|2a|C|1501

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2v

MET-PHE-mRNA

Chain 2x

Transfer RNA; tRNA