IL_12DQ_007
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DQ_007 not in the Motif Atlas
- Homologous match to IL_8B0X_071
- Geometric discrepancy: 0.1168
- The information below is about IL_8B0X_071
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
12DQ|1|1A|U|239
12DQ|1|1A|G|240
12DQ|1|1A|A|241
12DQ|1|1A|G|242
12DQ|1|1A|U|243
12DQ|1|1A|A|244
12DQ|1|1A|G|245
*
12DQ|1|1A|C|253
12DQ|1|1A|G|254
12DQ|1|1A|A|255
12DQ|1|1A|A|256
12DQ|1|1A|A|257
12DQ|1|1A|G|258
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
Coloring options: