IL_12DQ_012
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 12DQ|1|1A|U|504, 12DQ|1|1A|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DQ_012 not in the Motif Atlas
- Geometric match to IL_9DFE_012
- Geometric discrepancy: 0.0599
- The information below is about IL_9DFE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.4
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 11
Unit IDs
12DQ|1|1A|G|481
12DQ|1|1A|A|482
12DQ|1|1A|A|483
12DQ|1|1A|C|484
*
12DQ|1|1A|G|496
12DQ|1|1A|A|497
12DQ|1|1A|G|498
12DQ|1|1A|U|499
12DQ|1|1A|G|500
12DQ|1|1A|A|501
12DQ|1|1A|A|502
12DQ|1|1A|A|503
12DQ|1|1A|U|504
12DQ|1|1A|A|505
12DQ|1|1A|G|506
12DQ|1|1A|A|507
12DQ|1|1A|G|508
12DQ|1|1A|C|509
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
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