IL_12DQ_023

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

12DQ|1|1A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_023 not in the Motif Atlas

Geometric match to IL_9DFE_023

Geometric discrepancy: 0.1083

The information below is about IL_9DFE_023

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

12DQ|1|1A|C|844
12DQ|1|1A|G|845
12DQ|1|1A|C|846
*
12DQ|1|1A|G|931
12DQ|1|1A|G|932
12DQ|1|1A|A|933
12DQ|1|1A|G|934

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30