IL_12DQ_042

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GUUGG*CCAUC

Length

10 nucleotides

Bulged bases

12DQ|1|1A|U|1061, 12DQ|1|1A|C|1076

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DQ|1|1A|G|1059
12DQ|1|1A|U|1060
12DQ|1|1A|U|1061
12DQ|1|1A|G|1062
12DQ|1|1A|G|1063
*
12DQ|1|1A|C|1075
12DQ|1|1A|C|1076
12DQ|1|1A|A|1077
12DQ|1|1A|U|1078
12DQ|1|1A|C|1079

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16