IL_12DQ_045
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CGAUG*UAAG
- Length
- 9 nucleotides
- Bulged bases
- 12DQ|1|1A|U|1205
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DQ_045 not in the Motif Atlas
- Geometric match to IL_9DFE_045
- Geometric discrepancy: 0.0751
- The information below is about IL_9DFE_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68574.5
- Basepair signature
- cWW-tHH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
12DQ|1|1A|C|1202
12DQ|1|1A|G|1203
12DQ|1|1A|A|1204
12DQ|1|1A|U|1205
12DQ|1|1A|G|1206
*
12DQ|1|1A|U|1240
12DQ|1|1A|A|1241
12DQ|1|1A|A|1242
12DQ|1|1A|G|1243
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
Coloring options: