IL_12DQ_092

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_092 not in the Motif Atlas

Homologous match to IL_8B0X_184

Geometric discrepancy: 0.066

The information below is about IL_8B0X_184

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

12DQ|1|1A|G|2454
12DQ|1|1A|G|2455
*
12DQ|1|1A|C|2496
12DQ|1|1A|A|2497
12DQ|1|1A|C|2498

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1E

50S ribosomal protein L3

Chain 1Q

50S ribosomal protein L16