IL_12DQ_096

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_096 not in the Motif Atlas

Homologous match to IL_7A0S_088

Geometric discrepancy: 0.1303

The information below is about IL_7A0S_088

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

25

Unit IDs

12DQ|1|1A|C|2507
12DQ|1|1A|G|2508
*
12DQ|1|1A|U|2580
12DQ|1|1A|G|2581
12DQ|1|1A|G|2582

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3