IL_12DQ_099

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

12DQ|1|1A|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_099 not in the Motif Atlas

Homologous match to IL_8B0X_157

Geometric discrepancy: 0.1043

The information below is about IL_8B0X_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94991.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

12DQ|1|1A|U|2522
12DQ|1|1A|G|2523
*
12DQ|1|1A|C|2540
12DQ|1|1A|A|2541
12DQ|1|1A|A|2542
12DQ|1|1A|G|2543

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1N

50S ribosomal protein L13