IL_12DQ_105

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

12DQ|1|1A|U|2712, 12DQ|1|1A|A|2712|||A, 12DQ|1|1A|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_105 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.1415

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

12DQ|1|1A|C|2695
12DQ|1|1A|U|2696
*
12DQ|1|1A|A|2711
12DQ|1|1A|U|2712
12DQ|1|1A|A|2712|||A
12DQ|1|1A|A|2713
12DQ|1|1A|G|2714

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19