IL_12DQ_108

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_108 not in the Motif Atlas

Homologous match to IL_8B0X_169

Geometric discrepancy: 0.2818

The information below is about IL_8B0X_169

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

12DQ|1|1A|G|2843
12DQ|1|1A|G|2844
12DQ|1|1A|G|2845
12DQ|1|1A|G|2846
*
12DQ|1|1A|C|2870
12DQ|1|1A|C|2871
12DQ|1|1A|G|2872
12DQ|1|1A|A|2873
12DQ|1|1A|C|2874

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19