IL_12DQ_113
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DQ_113 not in the Motif Atlas
- Homologous match to IL_9H3G_150
- Geometric discrepancy: 0.116
- The information below is about IL_9H3G_150
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.15
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 14
Unit IDs
12DQ|1|1B|U|34
12DQ|1|1B|U|35
12DQ|1|1B|C|36
12DQ|1|1B|C|37
12DQ|1|1B|C|38
*
12DQ|1|1B|G|44
12DQ|1|1B|A|45
12DQ|1|1B|A|46
12DQ|1|1B|C|47
12DQ|1|1B|A|48
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 14
- 50S ribosomal protein L31
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 50S ribosomal protein L5
- Chain 1S
- 50S ribosomal protein L18
Coloring options: