IL_12DQ_179

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_179 not in the Motif Atlas

Homologous match to IL_8B0X_070

Geometric discrepancy: 0.0635

The information below is about IL_8B0X_070

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.6

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

12DQ|1|2A|G|188
12DQ|1|2A|G|189
12DQ|1|2A|A|190
12DQ|1|2A|A|191
12DQ|1|2A|C|192
12DQ|1|2A|U|193
12DQ|1|2A|G|194
*
12DQ|1|2A|C|201
12DQ|1|2A|U|202
12DQ|1|2A|C|203
12DQ|1|2A|A|204
12DQ|1|2A|G|205
12DQ|1|2A|U|206
12DQ|1|2A|A|207
12DQ|1|2A|C|208

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 27

50S ribosomal protein L34

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15