IL_12DQ_184

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

12DQ|1|2A|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_184 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.136

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.5

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

12DQ|1|2A|C|288
12DQ|1|2A|A|289
12DQ|1|2A|G|290
*
12DQ|1|2A|U|350
12DQ|1|2A|G|351
12DQ|1|2A|G|352
12DQ|1|2A|G|353

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains