IL_12DQ_193

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_193 not in the Motif Atlas

Homologous match to IL_8B0X_083

Geometric discrepancy: 0.0917

The information below is about IL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

12DQ|1|2A|U|703
12DQ|1|2A|G|704
12DQ|1|2A|A|705
12DQ|1|2A|A|706
12DQ|1|2A|G|707
*
12DQ|1|2A|U|724
12DQ|1|2A|G|725
12DQ|1|2A|G|726
12DQ|1|2A|A|727
12DQ|1|2A|G|728

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2