IL_12DQ_215

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

12DQ|1|2A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DQ|1|2A|C|1043
12DQ|1|2A|G|1044
12DQ|1|2A|A|1045
12DQ|1|2A|A|1046
12DQ|1|2A|G|1047
12DQ|1|2A|A|1048
12DQ|1|2A|C|1049
12DQ|1|2A|A|1050
12DQ|1|2A|G|1051
12DQ|1|2A|C|1052
*
12DQ|1|2A|G|1107
12DQ|1|2A|U|1108
12DQ|1|2A|C|1109
12DQ|1|2A|G|1110
12DQ|1|2A|A|1111
12DQ|1|2A|G|1112

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6