IL_12DQ_216

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

12DQ|1|2A|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_216 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1556

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_84227.2

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

12DQ|1|2A|C|1196
12DQ|1|2A|G|1197
12DQ|1|2A|U|1198
*
12DQ|1|2A|A|1247
12DQ|1|2A|G|1248
12DQ|1|2A|U|1249
12DQ|1|2A|G|1250

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20