IL_12DQ_231

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_231 not in the Motif Atlas

Geometric match to IL_9DFE_059

Geometric discrepancy: 0.0917

The information below is about IL_9DFE_059

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_45790.4

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

12DQ|1|2A|A|1469
12DQ|1|2A|G|1470
12DQ|1|2A|A|1471
12DQ|1|2A|A|1472
12DQ|1|2A|G|1473
*
12DQ|1|2A|U|1518
12DQ|1|2A|G|1519
12DQ|1|2A|G|1520
12DQ|1|2A|U|1523

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains