IL_12DQ_234

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

12DQ|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_234 not in the Motif Atlas

Geometric match to IL_9DFE_062

Geometric discrepancy: 0.0996

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.3

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

12DQ|1|2A|G|1526
12DQ|1|2A|G|1527
12DQ|1|2A|A|1528
12DQ|1|2A|A|1528|||A
12DQ|1|2A|G|1529
*
12DQ|1|2A|U|1540
12DQ|1|2A|G|1541
12DQ|1|2A|A|1542
12DQ|1|2A|C|1543
12DQ|1|2A|A|1544
12DQ|1|2A|A|1545
12DQ|1|2A|C|1546

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains