IL_12DQ_238

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_238 not in the Motif Atlas

Geometric match to IL_9DFE_066

Geometric discrepancy: 0.0754

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

12

Unit IDs

12DQ|1|2A|G|1666
12DQ|1|2A|G|1667
12DQ|1|2A|A|1668
12DQ|1|2A|A|1669
12DQ|1|2A|C|1670
12DQ|1|2A|U|1671
12DQ|1|2A|C|1672
12DQ|1|2A|U|1673
12DQ|1|2A|G|1674
*
12DQ|1|2A|C|1990
12DQ|1|2A|U|1991
12DQ|1|2A|G|1992
12DQ|1|2A|U|1993
12DQ|1|2A|C|1994

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14