IL_12DQ_239

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

12DQ|1|2A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_239 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.0952

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.4

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

12

Unit IDs

12DQ|1|2A|A|1669
12DQ|1|2A|C|1670
12DQ|1|2A|U|1671
12DQ|1|2A|C|1672
12DQ|1|2A|U|1673
12DQ|1|2A|G|1674
*
12DQ|1|2A|C|1990
12DQ|1|2A|U|1991
12DQ|1|2A|G|1992
12DQ|1|2A|U|1993

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14