IL_12DQ_251

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

12DQ|1|2A|C|2055, 12DQ|1|2A|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_251 not in the Motif Atlas

Homologous match to IL_7A0S_074

Geometric discrepancy: 0.1082

The information below is about IL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

12DQ|1|2A|A|2054
12DQ|1|2A|C|2055
12DQ|1|2A|G|2056
12DQ|1|2A|A|2057
*
12DQ|1|2A|U|2611
12DQ|1|2A|C|2612
12DQ|1|2A|U|2613
12DQ|1|2A|A|2614
12DQ|1|2A|U|2615

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22