IL_12DQ_269

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

12DQ|1|2A|G|2576, 12DQ|1|2A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_269 not in the Motif Atlas

Homologous match to IL_8B0X_155

Geometric discrepancy: 0.111

The information below is about IL_8B0X_155

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

12DQ|1|2A|C|2510
12DQ|1|2A|U|2511
12DQ|1|2A|C|2512
*
12DQ|1|2A|G|2574
12DQ|1|2A|C|2575
12DQ|1|2A|G|2576
12DQ|1|2A|A|2577
12DQ|1|2A|G|2578

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14