IL_12DQ_275

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

12DQ|1|2A|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_275 not in the Motif Atlas

Homologous match to IL_8B0X_162

Geometric discrepancy: 0.0978

The information below is about IL_8B0X_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.15

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

24

Unit IDs

12DQ|1|2A|C|2680
12DQ|1|2A|C|2681
12DQ|1|2A|U|2682
12DQ|1|2A|C|2683
12DQ|1|2A|U|2684
*
12DQ|1|2A|A|2725
12DQ|1|2A|U|2726
12DQ|1|2A|G|2727

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19