IL_12DQ_297

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

12DQ|1|2a|U|244, 12DQ|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_297 not in the Motif Atlas

Homologous match to IL_8B0X_013

Geometric discrepancy: 0.1057

The information below is about IL_8B0X_013

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.7

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

8

Unit IDs

12DQ|1|2a|C|242
12DQ|1|2a|A|243
12DQ|1|2a|U|244
12DQ|1|2a|C|245
12DQ|1|2a|A|246
12DQ|1|2a|G|247
*
12DQ|1|2a|C|277
12DQ|1|2a|G|278
12DQ|1|2a|A|279
12DQ|1|2a|C|280
12DQ|1|2a|G|281
12DQ|1|2a|A|282
12DQ|1|2a|C|283
12DQ|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17