IL_12DQ_315

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

12DQ|1|2a|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_315 not in the Motif Atlas

Homologous match to IL_8B0X_032

Geometric discrepancy: 0.1282

The information below is about IL_8B0X_032

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

12DQ|1|2a|G|662
12DQ|1|2a|A|663
12DQ|1|2a|G|664
12DQ|1|2a|A|665
12DQ|1|2a|G|666
*
12DQ|1|2a|U|740
12DQ|1|2a|G|741
12DQ|1|2a|G|742
12DQ|1|2a|U|743

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2f

30S ribosomal protein S6

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18