IL_12DQ_320

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_320 not in the Motif Atlas

Homologous match to IL_8B0X_037

Geometric discrepancy: 0.097

The information below is about IL_8B0X_037

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

7

Unit IDs

12DQ|1|2a|G|887
12DQ|1|2a|G|888
12DQ|1|2a|A|889
12DQ|1|2a|G|890
12DQ|1|2a|U|891
12DQ|1|2a|A|892
12DQ|1|2a|C|893
12DQ|1|2a|G|894
*
12DQ|1|2a|U|905
12DQ|1|2a|G|906
12DQ|1|2a|A|907
12DQ|1|2a|A|908
12DQ|1|2a|A|909
12DQ|1|2a|C|910

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17