IL_12DQ_326

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAAC*GGUGCCCCGCGAGGGGAGCC

Length

25 nucleotides

Bulged bases

12DQ|1|2a|G|1003, 12DQ|1|2a|G|1026

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DQ|1|2a|G|1002
12DQ|1|2a|G|1003
12DQ|1|2a|A|1004
12DQ|1|2a|A|1005
12DQ|1|2a|C|1006
*
12DQ|1|2a|G|1023
12DQ|1|2a|G|1024
12DQ|1|2a|U|1025
12DQ|1|2a|G|1026
12DQ|1|2a|C|1027
12DQ|1|2a|C|1028
12DQ|1|2a|C|1029
12DQ|1|2a|C|1030
12DQ|1|2a|G|1030|||A
12DQ|1|2a|C|1030|||B
12DQ|1|2a|G|1030|||C
12DQ|1|2a|A|1030|||D
12DQ|1|2a|G|1031
12DQ|1|2a|G|1032
12DQ|1|2a|G|1033
12DQ|1|2a|G|1034
12DQ|1|2a|A|1035
12DQ|1|2a|G|1036
12DQ|1|2a|C|1037
12DQ|1|2a|C|1038

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains