IL_12DQ_328

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

12DQ|1|2a|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_328 not in the Motif Atlas

Homologous match to IL_8B0X_046

Geometric discrepancy: 0.322

The information below is about IL_8B0X_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82453.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

12DQ|1|2a|U|1052
12DQ|1|2a|G|1053
12DQ|1|2a|C|1054
12DQ|1|2a|A|1055
12DQ|1|2a|U|1056
*
12DQ|1|2a|A|1204
12DQ|1|2a|U|1205
12DQ|1|2a|G|1206

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z

Chain 2y

Ribosome-associated inhibitor A