IL_1AQ4_005

3D structure

PDB id

1AQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

1AQ4|1|R|A|6||||P_1

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1AQ4_005 not in the Motif Atlas

Geometric match to IL_2C4Q_001

Geometric discrepancy: 0.0879

The information below is about IL_2C4Q_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

1AQ4|1|R|G|5||||P_1
1AQ4|1|R|A|6||||P_1
1AQ4|1|R|G|7||||P_1
*
1AQ4|1|R|C|14||||P_1
1AQ4|1|R|C|15||||P_1

Current chains

Chain R

RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')

Nearby chains

Chain A

PROTEIN(BACTERIOPHAGE MS2 COAT PROTEIN)