3D structure

PDB id
1AQ4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAG*CC
Length
5 nucleotides
Bulged bases
1AQ4|1|R|A|6||||P_1
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1AQ4_005 not in the Motif Atlas
Geometric match to IL_2C4Q_001
Geometric discrepancy: 0.0879
The information below is about IL_2C4Q_001
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.5
Basepair signature
cWW-L-cWW
Number of instances in this motif group
129

Unit IDs

1AQ4|1|R|G|5||||P_1
1AQ4|1|R|A|6||||P_1
1AQ4|1|R|G|7||||P_1
*
1AQ4|1|R|C|14||||P_1
1AQ4|1|R|C|15||||P_1

Current chains

Chain R
RNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')

Nearby chains

Chain A
PROTEIN(BACTERIOPHAGE MS2 COAT PROTEIN)

Coloring options:


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