IL_1BIV_001

3D structure

PDB id

1BIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

BOVINE IMMUNODEFICIENCY VIRUS TAT-TAR COMPLEX, NMR, 5 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1BIV_001 not in the Motif Atlas

Geometric match to IL_5J7L_315

Geometric discrepancy: 0.1739

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

1BIV|1|A|G|9
1BIV|1|A|U|10
1BIV|1|A|G|11
*
1BIV|1|A|C|25
1BIV|1|A|C|26

Current chains

Chain A

TAR RNA

Nearby chains

Chain B

TAT PEPTIDE