IL_1BYX_017

3D structure

PDB id

1BYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

CHIMERIC HYBRID DUPLEX R(GCAGUGGC).R(GCCA)D(CTGC) COMPRISING THE TRNA-DNA JUNCTION FORMED DURING INITIATION OF HIV-1 REVERSE TRANSCRIPTION

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAG*CTG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1BYX|17|A|C|2
1BYX|17|A|A|3
1BYX|17|A|G|4
*
1BYX|17|B|DC|105
1BYX|17|B|DT|106
1BYX|17|B|DG|107

Current chains

Chain A

RNA (5'-R(*GP*CP*AP*GP*UP*GP*GP*C)-3')

Chain B

DNA/RNA (5'-R(*GP*CP*CP*A)-D(P*CP*TP*GP*C)-3')

Nearby chains