IL_1C04_002

3D structure

PDB id

1C04 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

1C04|1|E|A|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1C04_002 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.2237

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

1C04|1|E|G|37
1C04|1|E|A|38
1C04|1|E|A|39
1C04|1|E|A|40
*
1C04|1|E|U|51
1C04|1|E|C|52

Current chains

Chain E

23S RRNA FRAGMENT

Nearby chains

Chain C

RIBOSOMAL PROTEIN L11