IL_1D4R_002

3D structure

PDB id

1D4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

29-mer fragment of human srp rna helix 6

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

GGGAGC*GGGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_89099.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

1D4R|1|A|G|12
1D4R|1|A|G|13
1D4R|1|A|G|14
1D4R|1|A|A|15
1D4R|1|A|G|16
1D4R|1|A|C|17
*
1D4R|1|B|G|12
1D4R|1|B|G|13
1D4R|1|B|G|14
1D4R|1|B|A|15
1D4R|1|B|G|16
1D4R|1|B|C|17

Current chains

Chain A

29-MER OF MODIFIED SRP RNA HELIX 6

Chain B

29-MER OF MODIFIED SRP RNA HELIX 6

Nearby chains