IL_1D4R_003

3D structure

PDB id

1D4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

29-mer fragment of human srp rna helix 6

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

GACC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_73915.1

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

21

Unit IDs

1D4R|1|A|G|22
1D4R|1|A|A|23
1D4R|1|A|C|24
1D4R|1|A|C|25
*
1D4R|1|B|G|4
1D4R|1|B|A|5
1D4R|1|B|C|6
1D4R|1|B|C|7

Current chains

Chain A

29-MER OF MODIFIED SRP RNA HELIX 6

Chain B

29-MER OF MODIFIED SRP RNA HELIX 6

Nearby chains