IL_1DFU_001

3D structure

PDB id

1DFU (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

1.8 Å

Loop

Sequence

CGAGAGUAG*CGAUGGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.5

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1DFU|1|M|C|97
1DFU|1|M|G|98
1DFU|1|M|A|99
1DFU|1|M|G|100
1DFU|1|M|A|101
1DFU|1|M|G|102
1DFU|1|M|U|103
1DFU|1|M|A|104
1DFU|1|M|G|105
*
1DFU|1|N|C|71
1DFU|1|N|G|72
1DFU|1|N|A|73
1DFU|1|N|U|74
1DFU|1|N|G|75
1DFU|1|N|G|76
1DFU|1|N|U|77
1DFU|1|N|A|78
1DFU|1|N|G|79

Current chains

Chain M

5S RRNA

Chain N

5S RRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN L25