IL_1DI2_001

3D structure

PDB id

1DI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONS

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

GGCGCGCGCC*GGCGCGCGCC

Length

20 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGCGCGCGCC,GGCGCGCGCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1DI2|1|G|G|41
1DI2|1|G|G|42
1DI2|1|G|C|43
1DI2|1|G|G|44
1DI2|1|G|C|45
1DI2|1|G|G|46
1DI2|1|G|C|47
1DI2|1|G|G|48
1DI2|1|G|C|49
1DI2|1|G|C|50
*
1DI2|1|G|G|41||||2_656
1DI2|1|G|G|42||||2_656
1DI2|1|G|C|43||||2_656
1DI2|1|G|G|44||||2_656
1DI2|1|G|C|45||||2_656
1DI2|1|G|G|46||||2_656
1DI2|1|G|C|47||||2_656
1DI2|1|G|G|48||||2_656
1DI2|1|G|C|49||||2_656
1DI2|1|G|C|50||||2_656

Current chains

Chain G

RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3')

Nearby chains

Chain B

DOUBLE STRANDED RNA BINDING PROTEIN A

Chain C

RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3')

Chain D

RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3')