IL_1DUQ_001

3D structure

PDB id

1DUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGGC*GGUAC

Length

9 nucleotides

Bulged bases

1DUQ|1|B|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.3

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

4

Unit IDs

1DUQ|1|A|G|104
1DUQ|1|A|G|105
1DUQ|1|A|G|106
1DUQ|1|A|C|107
*
1DUQ|1|B|G|123
1DUQ|1|B|G|124
1DUQ|1|B|U|125
1DUQ|1|B|A|126
1DUQ|1|B|C|127

Current chains

Chain A

THE REV BINDING ELEMENT

Chain B

THE REV BINDING ELEMENT

Nearby chains