IL_1DUQ_003

3D structure

PDB id

1DUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGGC*GGUAC

Length

9 nucleotides

Bulged bases

1DUQ|1|D|U|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76831.1

Basepair signature

08_cWW-cWW-cWH-cWW

Number of instances in this motif group

8

Unit IDs

1DUQ|1|C|G|204
1DUQ|1|C|G|205
1DUQ|1|C|G|206
1DUQ|1|C|C|207
*
1DUQ|1|D|G|223
1DUQ|1|D|G|224
1DUQ|1|D|U|225
1DUQ|1|D|A|226
1DUQ|1|D|C|227

Current chains

Chain C

THE REV BINDING ELEMENT

Chain D

THE REV BINDING ELEMENT

Nearby chains

Chain G

THE REV BINDING ELEMENT

Chain H

THE REV BINDING ELEMENT