IL_1EXY_010

3D structure

PDB id

1EXY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

1EXY|5|A|G|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1EXY_010 not in the Motif Atlas

Geometric match to IL_5J7L_004

Geometric discrepancy: 0.3925

The information below is about IL_5J7L_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

1EXY|5|A|G|8
1EXY|5|A|G|9
*
1EXY|5|A|C|20
1EXY|5|A|G|21
1EXY|5|A|A|22
1EXY|5|A|C|23

Current chains

Chain A

RNA APTAMER, 33-MER

Nearby chains

Chain B

HTLV-1 REX PEPTIDE