IL_1F1T_001
3D structure
- PDB id
- 1F1T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GA(5BU)C*GA(5BU)C
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1F1T_001 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.2022
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_51479.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
1F1T|1|A|G|2
1F1T|1|A|A|3
1F1T|1|A|5BU|4
1F1T|1|A|C|5
*
1F1T|1|A|G|34
1F1T|1|A|A|35
1F1T|1|A|5BU|36
1F1T|1|A|C|37
Current chains
- Chain A
- MALACHITE GREEN APTAMER RNA
Nearby chains
No other chains within 10ÅColoring options: