3D structure

PDB id
1F1T (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GA(5BU)C*GA(5BU)C
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1F1T_001 not in the Motif Atlas
Geometric match to IL_4EYA_008
Geometric discrepancy: 0.2022
The information below is about IL_4EYA_008
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_51479.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
10

Unit IDs

1F1T|1|A|G|2
1F1T|1|A|A|3
1F1T|1|A|5BU|4
1F1T|1|A|C|5
*
1F1T|1|A|G|34
1F1T|1|A|A|35
1F1T|1|A|5BU|36
1F1T|1|A|C|37

Current chains

Chain A
MALACHITE GREEN APTAMER RNA

Nearby chains

No other chains within 10Å

Coloring options:


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