IL_1F1T_001

3D structure

PDB id

1F1T (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GA(5BU)C*GA(5BU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1F1T_001 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.2022

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

1F1T|1|A|G|2
1F1T|1|A|A|3
1F1T|1|A|5BU|4
1F1T|1|A|C|5
*
1F1T|1|A|G|34
1F1T|1|A|A|35
1F1T|1|A|5BU|36
1F1T|1|A|C|37

Current chains

Chain A

MALACHITE GREEN APTAMER RNA

Nearby chains