IL_1F1T_003

3D structure

PDB id

1F1T (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAC*GG(5BU)AAC

Length

9 nucleotides

Bulged bases

1F1T|1|A|A|9, 1F1T|1|A|G|24

QA status

Modified nucleotides: 5BU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25573.1

Basepair signature

cWW-tSW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

1F1T|1|A|G|8
1F1T|1|A|A|9
1F1T|1|A|C|10
*
1F1T|1|A|G|23
1F1T|1|A|G|24
1F1T|1|A|5BU|25
1F1T|1|A|A|26
1F1T|1|A|A|27
1F1T|1|A|C|28

Current chains

Chain A

MALACHITE GREEN APTAMER RNA

Nearby chains