IL_1F9L_001

3D structure

PDB id

1F9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of a 22-Nucleotide Hairpin Similar to the P5ABC Region of a Group I Ribozyme with Cobalt(III)hexammine Complexed to the GAAA Tetraloop

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAAG*UGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1F9L_001 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2764

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

1F9L|1|A|G|4
1F9L|1|A|A|5
1F9L|1|A|A|6
1F9L|1|A|G|7
*
1F9L|1|A|U|16
1F9L|1|A|G|17
1F9L|1|A|G|18
1F9L|1|A|C|19

Current chains

Chain A

5'-R(*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*AP*AP*AP*GP*AP*UP*GP*GP*CP*GP*CP*CP*)-3'

Nearby chains