IL_1FFK_027

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGAAG*UGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_027 not in the Motif Atlas

Homologous match to IL_4V9F_027

Geometric discrepancy: 0.0614

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

1FFK|1|0|U|794
1FFK|1|0|G|795
1FFK|1|0|A|796
1FFK|1|0|A|797
1FFK|1|0|G|798
*
1FFK|1|0|U|815
1FFK|1|0|G|816
1FFK|1|0|G|817
1FFK|1|0|A|818
1FFK|1|0|A|819

Current chains

Chain 0

23S RRNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN L19

Chain W

RIBOSOMAL PROTEIN L37AE