IL_1FFK_054

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

1FFK|1|0|U|1625

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_054 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.0558

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1FFK|1|0|C|1570
1FFK|1|0|G|1571
1FFK|1|0|A|1572
1FFK|1|0|A|1573
1FFK|1|0|C|1574
*
1FFK|1|0|G|1622
1FFK|1|0|C|1623
1FFK|1|0|A|1624
1FFK|1|0|U|1625
1FFK|1|0|A|1626
1FFK|1|0|G|1627

Current chains

Chain 0

23S RRNA

Nearby chains