IL_1FFK_080

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUC*GGCUU

Length

8 nucleotides

Bulged bases

1FFK|1|0|C|2526

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_080 not in the Motif Atlas

Homologous match to IL_4V9F_084

Geometric discrepancy: 0.0875

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

1FFK|1|0|G|2494
1FFK|1|0|U|2495
1FFK|1|0|C|2496
*
1FFK|1|0|G|2524
1FFK|1|0|G|2525
1FFK|1|0|C|2526
1FFK|1|0|U|2527
1FFK|1|0|U|2528

Current chains

Chain 0

23S RRNA

Nearby chains

Chain F

RIBOSOMAL PROTEIN L10E