IL_1FFK_092

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

1FFK|1|0|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_092 not in the Motif Atlas

Homologous match to IL_4V9F_096

Geometric discrepancy: 0.041

The information below is about IL_4V9F_096

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1FFK|1|0|G|2772
1FFK|1|0|G|2773
1FFK|1|0|U|2774
1FFK|1|0|A|2775
1FFK|1|0|A|2776
1FFK|1|0|G|2777
*
1FFK|1|0|C|2797
1FFK|1|0|G|2798
1FFK|1|0|A|2799
1FFK|1|0|A|2800
1FFK|1|0|A|2801
1FFK|1|0|C|2802

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L6

Chain G

RIBOSOMAL PROTEIN L13