IL_1FFZ_013

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFZ_013 not in the Motif Atlas

Homologous match to IL_4V9F_086

Geometric discrepancy: 0.1475

The information below is about IL_4V9F_086

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

1FFZ|1|A|C|2542
1FFZ|1|A|G|2543
*
1FFZ|1|A|U|2615
1FFZ|1|A|G|2616
1FFZ|1|A|G|2617

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain B

R(P*CP*C*)-D(P*A)-R(P*(PU))